[INFO] cloning repository https://github.com/khshaheerah/dna-toolkit-A-Rust-project
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/khshaheerah/dna-toolkit-A-Rust-project" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkhshaheerah%2Fdna-toolkit-A-Rust-project", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkhshaheerah%2Fdna-toolkit-A-Rust-project'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c54b762920f621104619ca442612cba5971fbd31
[INFO] testing khshaheerah/dna-toolkit-A-Rust-project against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkhshaheerah%2Fdna-toolkit-A-Rust-project" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/khshaheerah/dna-toolkit-A-Rust-project
[INFO] finished tweaking git repo https://github.com/khshaheerah/dna-toolkit-A-Rust-project
[INFO] tweaked toml for git repo https://github.com/khshaheerah/dna-toolkit-A-Rust-project written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/khshaheerah/dna-toolkit-A-Rust-project on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/khshaheerah/dna-toolkit-A-Rust-project already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded assert_cmd v2.1.2
[INFO] [stderr]   Downloaded colored v2.2.0
[INFO] [stderr]   Downloaded predicates-tree v1.0.13
[INFO] [stderr]   Downloaded float-cmp v0.10.0
[INFO] [stderr]   Downloaded predicates-core v1.0.10
[INFO] [stderr]   Downloaded csv-core v0.1.13
[INFO] [stderr]   Downloaded predicates v3.1.4
[INFO] [stderr]   Downloaded csv v1.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cc34ce18d3b1356209ec8567e821ac9ad71d5ab7e1d0e1555866afb989433489
[INFO] running `Command { std: "docker" "start" "-a" "cc34ce18d3b1356209ec8567e821ac9ad71d5ab7e1d0e1555866afb989433489", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cc34ce18d3b1356209ec8567e821ac9ad71d5ab7e1d0e1555866afb989433489", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cc34ce18d3b1356209ec8567e821ac9ad71d5ab7e1d0e1555866afb989433489", kill_on_drop: false }`
[INFO] [stdout] cc34ce18d3b1356209ec8567e821ac9ad71d5ab7e1d0e1555866afb989433489
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0c2ae6fb0e388e12c79fba12338610c63f6fb4880eaeec6672c41405b84fe97f
[INFO] running `Command { std: "docker" "start" "-a" "0c2ae6fb0e388e12c79fba12338610c63f6fb4880eaeec6672c41405b84fe97f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling zmij v1.0.21
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling itoa v1.0.17
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]    Compiling clap_lex v1.0.0
[INFO] [stderr]    Compiling ryu v1.0.23
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling colored v2.2.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling clap_builder v4.5.60
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling clap v4.5.60
[INFO] [stderr]    Compiling dna-toolkit v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.74s
[INFO] running `Command { std: "docker" "inspect" "0c2ae6fb0e388e12c79fba12338610c63f6fb4880eaeec6672c41405b84fe97f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c2ae6fb0e388e12c79fba12338610c63f6fb4880eaeec6672c41405b84fe97f", kill_on_drop: false }`
[INFO] [stdout] 0c2ae6fb0e388e12c79fba12338610c63f6fb4880eaeec6672c41405b84fe97f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a57f3f2ebd270bbca76c5d5f9d94bcf1b9909d1bc83f6ecacd9451e47e2abe7a
[INFO] running `Command { std: "docker" "start" "-a" "a57f3f2ebd270bbca76c5d5f9d94bcf1b9909d1bc83f6ecacd9451e47e2abe7a", kill_on_drop: false }`
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling libc v0.2.182
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling dna-toolkit v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stdout]  --> tests/integration_tests.rs:7:28
[INFO] [stdout]   |
[INFO] [stdout] 7 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stdout]   |                            ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stdout]   --> tests/integration_tests.rs:22:28
[INFO] [stdout]    |
[INFO] [stdout] 22 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stdout]    |                            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stdout]   --> tests/integration_tests.rs:40:28
[INFO] [stdout]    |
[INFO] [stdout] 40 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stdout]    |                            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 17.60s
[INFO] running `Command { std: "docker" "inspect" "a57f3f2ebd270bbca76c5d5f9d94bcf1b9909d1bc83f6ecacd9451e47e2abe7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a57f3f2ebd270bbca76c5d5f9d94bcf1b9909d1bc83f6ecacd9451e47e2abe7a", kill_on_drop: false }`
[INFO] [stdout] a57f3f2ebd270bbca76c5d5f9d94bcf1b9909d1bc83f6ecacd9451e47e2abe7a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 741f8889a02b88cd5508c94724401f88dcf11e4151793adfb265a8148b1a8226
[INFO] running `Command { std: "docker" "start" "-a" "741f8889a02b88cd5508c94724401f88dcf11e4151793adfb265a8148b1a8226", kill_on_drop: false }`
[INFO] [stderr] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stderr]  --> tests/integration_tests.rs:7:28
[INFO] [stderr]   |
[INFO] [stderr] 7 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stderr]   |                            ^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stderr]   --> tests/integration_tests.rs:22:28
[INFO] [stderr]    |
[INFO] [stderr] 22 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stderr]    |                            ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `assert_cmd::Command::cargo_bin`: incompatible with a custom cargo build-dir, see instead `cargo::cargo_bin_cmd!`
[INFO] [stderr]   --> tests/integration_tests.rs:40:28
[INFO] [stderr]    |
[INFO] [stderr] 40 |     let mut cmd = Command::cargo_bin("dna-toolkit")?;
[INFO] [stderr]    |                            ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `dna-toolkit` (test "integration_tests") generated 3 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/dna_toolkit-f4fee9ee90057c32)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test dna::sequence::tests::test_validate_dna ... ok
[INFO] [stdout] test dna::sequence::tests::test_translate ... ok
[INFO] [stdout] test dna::stats::tests::test_gc_content ... ok
[INFO] [stdout] test dna::stats::tests::test_gc_skew ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/dna_toolkit-dd33d3214c4b44fb)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests.rs (/opt/rustwide/target/debug/deps/integration_tests-2e43a1a9498a6ed3)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test test_gc_command ... FAILED
[INFO] [stdout] test test_translate_command ... FAILED
[INFO] [stdout] test test_stats_command ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_gc_command stdout ----
[INFO] [stdout] Error: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }
[INFO] [stdout] 
[INFO] [stdout] ---- test_translate_command stdout ----
[INFO] [stdout] Error: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_gc_command
[INFO] [stdout]     test_translate_command
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 1 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test integration_tests`
[INFO] running `Command { std: "docker" "inspect" "741f8889a02b88cd5508c94724401f88dcf11e4151793adfb265a8148b1a8226", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "741f8889a02b88cd5508c94724401f88dcf11e4151793adfb265a8148b1a8226", kill_on_drop: false }`
[INFO] [stdout] 741f8889a02b88cd5508c94724401f88dcf11e4151793adfb265a8148b1a8226
